Molecular lab selected publications
Facilitating high throughput collections-based genomics: a comparison of DNA extraction and library building methods. (2025). Marsh, W., Hall, A., Barnes, I., Price, B. Sci Rep 15, 6013. https://doi.org/10.1038/s41598-025-88443-0
A Snakemake Toolkit for the Batch Assembly, Annotation and Phylogenetic Analysis of Mitochondrial Genomes and Ribosomal Genes From Genome Skims of Museum Collections (2025) White OW, Hall A, Price BW, Williams ST, Clark MD. Molecular Ecology Resources 25(1)
Darwin Tree of Life Consortium. A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project. (2024). Alex D. Twyford, Jordan Beasley , Ian Barnes, Heather Allen, Freja Azzopardi , David Bell , Mark L. Blaxter , Gavin Broad, Lucia Campos-Dominguez, Darren Choonea, Liam Crowley, Piotr Cuber, Michael Cunliffe, Alexandra Dombrowski, Brian Douglas, Laura L. Forrest , Ester Gaya , Clementine Greeves , Claire Griffin, Joanna Harley, Michelle L. Hart, Peter W.H. Holland, Peter M. Hollingsworth, Inez Januszczak , Amanda Jones, Paul Kersey, Estelle Kilias, Mara K.N. Lawniczak , Owen T. Lewis , Sahr Mian, Alice Minotto , Raju Misra, Peter O. Mulhair, Lyndall Pereira da Conceicoa , Ben W. Price , Silvia Salatino, Felix Shaw, Olga Sivell , Laura Sivess, Rebekka Uhl, Kieran Woof, Wellcome Open Research 2024, 9:339. https://doi.org/10.12688/wellcomeopenres.21143.1
Refining the Schistosoma haematobium recombinase polymerase amplification (Sh-RPA) assay: moving towards point-of-care use in endemic settings (2024). Owain Donnelly, Silvia Mesquita, John Archer, Said M. Ali, Zikmund Bartonicek, Elena B. Lugli & Bonnie L. Webster. Parasites Vectors 17, 321. https://doi.org/10.1186/s13071-024-06380-9
Exome capture of Antarctic krill (Euphausia superba) for cost effective genotyping and population genetics with historical collections (2024). Oliver W. White, Sarah Walkington, Hugh Carter, Lauren Hughes, Melody Clark, Thomas Mock, Geraint A. Tarling, Matthew D. Clark. Mol Ecol Resour https://doi.org/10.1111/1755-0998.14022 First published: 13 September 2024
CD62L-selected umbilical cord blood universal CAR T cells (2024). Christos Georgiadis, Lauren Nickolay, Farhatullah Syed, Hong Zhan, Soragia Athina Gkazi, Annie Etuk, Ulrike Abramowski-Mock, Roland Preece, Piotr Cuber, Stuart Adams, Giorgio Ottaviano and Waseem Qasim. bioRxiv preprint doi: https://doi.org/10.1101/2024.01.18.576145
Two new sympatric species of the pirate spider genus Ero C.L. Koch, 1836 from the cloud forest of Saint Helena Island,South Atlantic Ocean (Araneae: Mimetidae) (2024) Danniella Sherwood, Arnaud Henrard, Martina Peters, Benjamin W. Price,AndieC. HALL,Oliver W. White, Virginie Grignet & Vicky Wilkins. European Journal of Taxonomy 921: 76–97 doi.org/10.5852/ejt.2024.921.2417
The biogeography of Gabonese savannas: Evidence from termite community richness and composition (2023). Fidèle Evouna Ondo, Kathryn J. Jeffery, Robin Whytock, Katharine A. Abernethy, Pierre Couteron, Paul Eggleton, Claire Griffin, Nicolas J. Ostle, Aurelie-Flore, Koumba Pambo, Alfred Ngomanda, Josué Edzang Ndong, Catherine L. Parr. Journal of Biogeography. 2023;50:1505–1518.DOI: 10.1111/jbi.14671
Tachystola mulliganae sp.nov. (lep.:Oecophoridae) a western Australian species adventive in west London (2023). Mark J Sterling, Colin W Plant, Ben W Price, Piotr Cuber, Andie Hall, Jordan Beasley and David Lees. Entomologist’s Rec.J.Var. 135 (2023) 225.
Sequencing Analysis of MUC6 and MUC16 Gene Fragments in Patients with Oropharyngeal Squamous Cell Carcinoma Reveals Novel Mutations: A Preliminary Study. Gaździcka J, Biernacki K, Salatino S, Gołąbek K, Hudy D, Świętek A, Miśkiewicz-Orczyk K, Koniewska A, Misiołek M, Strzelczyk JK. Current Issues in Molecular Biology. 2023; 45(7):5645-5661. https://doi.org/10.3390/cimb45070356
Ooencyrtus pitosina (Hymenoptera: Encyrtidae)–A natural enemy of Samoan swallowtail butterfly Papilio godeffroyi (Lepidoptera: Papilionidae). Polaszek A, Noyes JS, Lugli EB, Schmaedick MA, Peck RW, Banko PC, et al. PLoS ONE 18(8): e0288306. https://doi.org/10.1371/journal.pone.0288306
Inferring the ecological and evolutionary determinants of community genetic diversity. (2023).Isaac Overcast, Víctor Noguerales, Emmanouil Meramveliotakis, Carmelo Andújar, Paula Arribas, Thomas J. Creedy, Brent C. Emerson, Alfried P. Vogler, Anna Papadopoulou, Hélène Morlon. Molecular Ecology. 2023;00:1–17. https://doi.org/10.1111/mec.16958
CRISPR-assisted test for Schistosoma haematobium. (2023). Dounia Cherkaoui, Silvia G. Mesquita, Da Huang, Elena B. Lugli, Bonnie L. Webster & Rachel A. McKendry. March 2023 Scientific Reports 13(1). DOI: 10.1038/s41598-023-31238-y
Comparing the accuracy and efficiency of third generation sequencing technologies, Oxford Nanopore Technol-ogies, and Pacific Biosciences, for DNA barcode sequencing applications (2023). Piotr Cuber , Darren Chooneea , Clementine Geeves , Silvia Salatino Thomas J. Creedy , Claire Griffin , Laura Sivess, Ian Barnes, Ben Price, Raju Misra . Ecological Genetics and Genomics 28 (2023) 100181 https://doi.org/10.1016/j.egg.2023.100181
Development of real-time and lateral flow recombinase polymerase amplification assays for rapid detection of Schistosoma mansoni (2022). Mesquita Silvia Gonçalves, Lugli Elena Birgitta, Matera Giovanni, Fonseca Cristina Toscano, Caldeira Roberta Lima, Webster Bonnie. Front. Microbiol., 18 November 2022 Sec. Infectious Agents and Disease Volume 13 - 2022https://doi.org/10.3389/fmicb.2022.1043596
Evaluation of genome skimming to detect and characterise human and livestock helminths (2023). Marina Papaiakovou, Natalia Fraija-Fernández , Katherine James, Andrew G. Briscoe, Andie Hall, Timothy P. Jenkins, Julia Dunn, Bruno Levecke, Zeleke Mekonnen, Piet Cools, Stephen R. Doyle, Cinzia Cantacessi, D.T.J. Littlewood.International Journal for Parasitology. Article in Press. doi: 10.1016/j.ijpara.2022.12.002
Air pollution induces Staphylococcus aureus USA300 respiratory tract colonization mediated by specific bacterial genetic responses involving the global virulence gene regulators Agr and Sae. (2022)Jo Purves, Shane J. K. Hussey, Louise Corscadden, Lillie Purser, Andie Hall, Raju Misra, Liza Selley, Paul S. Monks, Julian M. Ketley, Peter W. Andrew and Julie A. Morrissey. Environmental Microbiology 00(00), 00–00 doi:10.1111/1462-2920.16076.
Unprecedented frequency of mitochondrial introns in colonial bilaterians. (2022) Helen Louise Jenkins, Rachael Graham, Joanne Sara Porter, Leandro Manzoni Vieira, Ana Carolina Sousa de Almeida, Andie Hall, Aaron O’Dea, Simon Edward Coppard &Andrea Waeschenbach . Sci Rep 12, 10889 (2022). https://doi.org/10.1038/s41598-022-14477-3
Revision of the World Species of Megaphragma Timberlake (Hymenoptera: Trichogrammatidae) (2022). Polaszek A, Fusu L, Viggiani G, Hall A, Hanson P, Polilov AA. Insects. 13(6):561. https://doi.org/10.3390/insects13060561
The Impact of COVID-19 Pandemic on Halting Sustainable Development in the Colca y Volcanes de Andagua UNESCO Global Geopark in Peru. (2022). Andrzej Gałaś , Roya Elaine Haghighat-Khah, Piotr Cuber , Melvin Benavente , Denise Gorfinkiel and Slávka Gałaś. Prospects and Future Sustainability 14, 4043 https://doi.org/10.3390/su14074043
Diversity and Phylogeny of Novel Cord-Forming Fungi from Borneo. (2022). Foster, R.; Hartikainen, H.; Hall, A.; Bass, D.Microorganisms 10, 239. https://doi.org/10.3390/microorganisms10020239
Comparative Genomics Analysis Demonstrated a Link Between Staphylococci Isolated from Different Sources: A Possible Public Health Risk. (2021). Cave, R., Misra, R., Chen, J., Wang, S. and Mkrtchyan, H.V. Frontiers in Microbiology (12)257 DOI 10.3389/fmicb.2021.576696
DEFRA Centre of Excellence for DNA Methods: Evaluation of DNA barcode libraries used in the UK and developing an action plan to fill priority gaps. Natural England Joint Publication JP035. (2020). Ben Price, Andy Briscoe, Raju Misra and Gavin Broad https://nhm.openrepository.com/handle/10141/622857
The levels of sICAM-1, sELAM-1, TNFα and sTNFR1 proteins in patients with colorectal adenocarcinoma in tumor and corresponding normal mucosa (2020).Joanna Katarzyna Strzelczyk, Piotr Cuber, Benjamin Bochon, Krzysztof Gajdzik, Janusz Strzelczyk, Łukasz Krakowczyk, Andrzej Wiczkowski, Aleksander Jerzy Owczarek and Zofia Ostrowska. Acta Biochimica Polonica Epub: No 5449. Vol. 67. https://doi.org/10.18388/abp.2020_5449
Mitochondrial and plastid genome variability of Corallina officinalis (Corallinales, Rhodophyta) (2020) Chris Yesson, Xueni Bian, Christopher Williamson, Andrew G Briscoe & Juliet Brodie Applied Phycology, 1:1, 73-9,DOI: 10.1080/26388081.2020.1827940
Treatments for Lipid Oxidation in Taxidermy and Impact on DNA Recovery (2020) Lu Allington-Jones & Ranbir Bailey Studies in conservation. DOI: 10.1080/00393630.2020.1855858
Development of a Molecular Snail Xeno-monitoring Assay to Detect Schistosoma haematobium and Schistosoma bovis Infections in their Bulinus Snail Hosts. 2020. Tom Pennance, John Archer, Elena Birgitta Lugli, Penny Rostron ,Felix Llanwarne, Said Mohammed Ali, Amour Khamis Amour,Khamis Rashid Suleiman, Sarah Li , David Rollinson, Jo Cable, Stefanie Knopp, Fiona Allan, Shaali Makame Ameand Bonnie Lee Webster. Molecules 2020, 25, 4011; doi:10.3390/molecules25174011
Metabarcoding unsorted kick-samples facilitates macroinvertebrate-based biomonitoring with increased taxonomic resolution, while outperforming environmental DNA (2020) Lyndall Pereira-da-Conceicoa, Vasco Elbrecht, Andie Hall, Andrew Briscoe,Helen Barber-James, Benjamin Price. Environmental DNA. 2020;00:1–19. DOI: 10.1002/edn3.116
The first mitochondrial genomes of endosymbiotic rhabdocoels illustrate evolutionary relaxation of atp8 and genome plasticity in flatworms (2020). Marlies Monnens, SofieThijs, Andrew G Briscoe et al. International Journal of Biological Macromolecules Volume 162, 1 November 2020, Pages 454- 469. https://doi.org/10.1016/j.ijbiomac.2020.06.025
Polaszek A, Noyes JS, Russell S, Ramadan MM (2020) Metaphycus macadamiae (Hymenoptera: Encyrtidae) – a biological control agent of macadamia felted coccid Acanthococcus ironsidei (Hemiptera: Eriococcidae) in Hawaii. PLoSONE 15(4):e0230944. https://doi.org/10.1371/journal.pone.0230944
The increased sensitivity of qPCR in comparison to Kato-Katz is required for the accurate assessment of the prevalence of soil-transmitted helminth infection in settings that have received multiple rounds of mass drug administration. Dunn, JC. Papaiakovou, M. Thwe Han, K. Chooneea, D…Misra, R. et al. Parasites & Vectors volume 13, Article number: 324 (2020) doi: 10.1186/s13071-020-04197-w
Deep-Sea anthropogenic macrodebris harbours rich and diverse communities of bacteria and archaea. (2018) Woodall, L.C., Jungblut, A.D., Hopkins, K., Hall. A., Robinson, L.F., Gwinnett, C., Paterson, G.L.J. Plos One. doi.org/10.1371/journal.pone.0206220